Welcome!

Eclipse Authors: Mano Marks, Liz McMillan, JP Morgenthal, Yeshim Deniz, Elizabeth White

Related Topics: @BigDataExpo, Java IoT, Open Source Cloud, Containers Expo Blog, Server Monitoring, @CloudExpo

@BigDataExpo: Blog Feed Post

Big Data – Storage Mediums and Data Structures

Big Data presents something of a storage dilemma. There is no one data store to rule them all.

My working title was Big Data, Storage Dilemma.

They say dilemma. I say dilemna. I'm serious. I spell it dilemna.

Big Data presents something of a storage dilemma. There is no one data store to rule them all.

Should different data structures be persisted to different storage mediums?

Storage Medium
Identifying the appropriate medium is a function of performance, cost, and capacity.

Random Access Memory
It's fast. Very. It's expense. Very.

If we are configuring an HP DL980 G7 server, it will cost $3,672 for 128GB of memory with 8x 16GB modules or $9,996 for 128GB of memory with 4x 32GB modules. That is $28-78 / GB.

We can configure an HP DL980 G7 server with up to 4TB of memory.

Solid State Drive
It's not as fast or as expensive as random access memory. It's faster than a hard disk drive. A lot faster. It's more expensive than a hard disk drive. A lot more expensive.

If we are configuring an HP DL980 G7 server, it will cost $4,199 for a 400GB SAS MLC drive or $7,419 for a 400GB SAS SLC drive. That is $10-18 / GB. It's a performance / size trade-off. While SLC drives often perform better, MLC drives are often available in larger sizes. Further, the read / write performance is either symmetric or asymmetric.

That, and SLC drives often have greater endurance.


Sequential
Read
(MB/s)
Sequential
Write
(MB/s)
Random
Read
(IOPS)
Random
Write
(IOPS)
Intel 520 (480GB) 550 520 50,000 50,000
Intel 520 (240GB) 550 520 50,000 80,000
Intel DC S3700 500 460 75,000 36,000

The performance of solid state drives can vary:

  • consumer / enterprise
  • MLC / eMLC / SLC
  • SATA / SAS / PCIe

The capacity of enterprise solid state drives is often less than that of enterprise hard disk drives (4TB). However, the capacity of PCIe drives such as the Fusion-io ioDrive Octal (5.12TB / 10.24TB) is greater than that of enterprise hard disk drives (4TB). In addition, the performance of PCIe drives is greater than that of SAS or SATA drives.


Sequential
Read
(MB/s)
Sequential
Write
(MB/s)
Random
Read
(IOPS)
Random
Write
(IOPS)
Intel 910 (800GB) 2,000 1,000 180,000 75,000

Hard Disk Drive

It may not be fast, but it is inexpensive.

If we are configuring an HP DL980 G7 server, it will cost $309 for a 300GB 10K drive or $649 for a 300GB 15K drive. That is $1-2 / GB. It's a performance / size trade-off. While a 15K drive will perform better than a 10K drive, it will often have less capacity. The sequential read / write performance of hard disk drives is often between 150-200MB/s. As such, a RAID configuration may be a cost effective alternative to a single solid state drive for sequential read / write access.

The capacity of enterprise hard disk drives (4TB) is often greater than that of enterprise solid state drives.

Data Structure
Hash Table

JBoss Data Grid is an in-memory data grid with the data stored in a hash table. However, JBoss Data Grid supports persistence via write-behind or write-through. For all intents and purposes (e.g. map / reduce), all of the data should fit in memory.

Access

  • Random Reads, Random Writes

Riak is a key / value store. If persistence has been configured with Bitcast, the data is stored in a log structured hash table. An in-memory hash table contains the key / value pointers. The value is a pointer to the data. As such, all of the key / value pointers must fit in memory. The data is persisted via append only log files.

Access

  • Complex Index in Memory
  • Random Reads, Sequential Writes

Point queries perform well in hash tables. Range queries do not. Though there is always map / reduce.

B-Tree
MongoDB is a document database with the data stored in a B-Tree. The data is persisted via memory mapped files.

Access

  • Partial Index (Internal Nodes) in Memory
  • Random Reads, Sequential Reads, Random Writes

CouchDB is a document database with the data stored in a B+Tree. The data is persisted via append only log files.

Access

  • Partial Index in Memory
  • Random Reads, Sequential Reads, Sequential Writes

In a B+ Tree, the data is only stored in the leaf nodes. In a B-Tree, the data is stored in both the internal nodes and the leaf nodes. The advantage of a B+ Tree is that the leaf nodes are linked. As a result, range queries perform better with a B+ Tree. However, point queries perform better with a B-Tree.

CouchDB has implemented an append only B+ Tree. An alternative is the copy-on-write (CoW) B+ Tree. A write optimization for a B-Tree is buffering. First, the data written to an internal buffer in an internal node. Second, the buffer is flushed to a leaf node. As a result, random writes are turned in to sequential writes. The cost of random writes is thus amortized.  However, I am not aware of any open source data stores that have implemented a CoW B+ Tree or have implemented buffering with a B-Tree.

Range queries perform well with a B/B+ Tree. Point queries, not as well as hash tables.

Log Structured Merge Tree
Apache HBase and Apache Cassandra are both column oriented data stores, and they have both store data in an LSM-Tree. Apache HBase has implemented a cache oblivious lookahead array (COLA). Apache Cassandra has implemented a sorted array merge tree (SAMT).

In both implementations, a write is first written to a write-ahead log. Next, it is written to a memtable. A memtable is an in-memory sorted string table (SSTable). Later, the memtable is flushed and persisted as an SSTable. As result, random writes are turned in to sequential writes. However, a point query with an LSM-Tree may require multiple random reads.

Apache HBase implemented a single-level index with HFile version 1. However, because every index was cached, it resulted in high memory usage.

Apache HBase implemented a multi-level index a la a B+ Tree with HFile (SSTable) version 2. The SSTable contains a root index, a root index with leaf indexes, or a root index with an intermediate index and leaf indexes. The root index is stored in memory. The intermediate and leaf indexes may be stored in the block cache. In addition, the SSTable contains a compound (block level) bloom filter. The bloom filter is used to determine if the data is not in the data block.

Recommendation / Access

  • Partial Index / Bloom Filter in Memory
  • Random Reads, Sequential Reads, Sequential Writes

A read optimization for an LSM-Tree is fractional cascading. The idea is that each level contains both data and pointers to data in the next level. However, I am not aware of any open source data stores that have implemented fractional cascading.

I like the idea of a hybrid / tiered storage solution for an LSM-Tree implementation with the first level in memory, second level on solid state drives, and third level on hard disk drives. I've seen this solution described in academia, but I am not aware of any open source implementations.

Conclusion
I find it interesting that key / value stores often store data in a hash table, that document stores often store data in a B+/B-Tree, and that column oriented stores often store data in an LSM-Tree. Perhaps it is because key / value stores focus on the performance of point queries, document stores support secondary indexes (MongoDB) / views  (CouchDB), and column oriented stores support range queries. Perhaps it because document stores were not created with distribution (shards / partitions) in mind and thus assume that the complete index can not be stored in memory.

Notes
I found this paper to be very helpful in examining data structures as it covers most of the ones highlighted in this post:

Efficient, Scalable, and Versatile Application and System Transaction Management for Direct Storage Layers (link)

Read the original blog entry...

More Stories By Daniel Thompson

I curate the content on this page, but the credit goes to my talented colleagues for the posts that you see here. Much of what you read on this page is the work of friends at How to JBoss, and I encourage you to drop by the site at http://www.howtojboss.com for some of the best JBoss technical and non-technical content for developers, architects and technology executives on the Web.

@ThingsExpo Stories
IoT offers a value of almost $4 trillion to the manufacturing industry through platforms that can improve margins, optimize operations & drive high performance work teams. By using IoT technologies as a foundation, manufacturing customers are integrating worker safety with manufacturing systems, driving deep collaboration and utilizing analytics to exponentially increased per-unit margins. However, as Benoit Lheureux, the VP for Research at Gartner points out, “IoT project implementers often un...
SYS-CON Events announced today that Technologic Systems Inc., an embedded systems solutions company, will exhibit at SYS-CON's @ThingsExpo, which will take place on June 6-8, 2017, at the Javits Center in New York City, NY. Technologic Systems is an embedded systems company with headquarters in Fountain Hills, Arizona. They have been in business for 32 years, helping more than 8,000 OEM customers and building over a hundred COTS products that have never been discontinued. Technologic Systems’ pr...
SYS-CON Events announced today that IoT Now has been named “Media Sponsor” of SYS-CON's 20th International Cloud Expo, which will take place on June 6–8, 2017, at the Javits Center in New York City, NY. IoT Now explores the evolving opportunities and challenges facing CSPs, and it passes on some lessons learned from those who have taken the first steps in next-gen IoT services.
SYS-CON Events announced today that WineSOFT will exhibit at SYS-CON's 20th International Cloud Expo®, which will take place on June 6-8, 2017, at the Javits Center in New York City, NY. Based in Seoul and Irvine, WineSOFT is an innovative software house focusing on internet infrastructure solutions. The venture started as a bootstrap start-up in 2010 by focusing on making the internet faster and more powerful. WineSOFT’s knowledge is based on the expertise of TCP/IP, VPN, SSL, peer-to-peer, mob...
SYS-CON Events announced today that delaPlex will exhibit at SYS-CON's @CloudExpo, which will take place on June 6-8, 2017, at the Javits Center in New York City, NY. delaPlex pioneered Software Development as a Service (SDaaS), which provides scalable resources to build, test, and deploy software. It’s a fast and more reliable way to develop a new product or expand your in-house team.
The Internet of Things can drive efficiency for airlines and airports. In their session at @ThingsExpo, Shyam Varan Nath, Principal Architect with GE, and Sudip Majumder, senior director of development at Oracle, discussed the technical details of the connected airline baggage and related social media solutions. These IoT applications will enhance travelers' journey experience and drive efficiency for the airlines and the airports.
You think you know what’s in your data. But do you? Most organizations are now aware of the business intelligence represented by their data. Data science stands to take this to a level you never thought of – literally. The techniques of data science, when used with the capabilities of Big Data technologies, can make connections you had not yet imagined, helping you discover new insights and ask new questions of your data. In his session at @ThingsExpo, Sarbjit Sarkaria, data science team lead ...
The security needs of IoT environments require a strong, proven approach to maintain security, trust and privacy in their ecosystem. Assurance and protection of device identity, secure data encryption and authentication are the key security challenges organizations are trying to address when integrating IoT devices. This holds true for IoT applications in a wide range of industries, for example, healthcare, consumer devices, and manufacturing. In his session at @ThingsExpo, Lancen LaChance, vic...
With billions of sensors deployed worldwide, the amount of machine-generated data will soon exceed what our networks can handle. But consumers and businesses will expect seamless experiences and real-time responsiveness. What does this mean for IoT devices and the infrastructure that supports them? More of the data will need to be handled at - or closer to - the devices themselves.
SYS-CON Events announced today that Dataloop.IO, an innovator in cloud IT-monitoring whose products help organizations save time and money, has been named “Bronze Sponsor” of SYS-CON's 20th International Cloud Expo®, which will take place on June 6-8, 2017, at the Javits Center in New York City, NY. Dataloop.IO is an emerging software company on the cutting edge of major IT-infrastructure trends including cloud computing and microservices. The company, founded in the UK but now based in San Fran...
In his session at @ThingsExpo, Sudarshan Krishnamurthi, a Senior Manager, Business Strategy, at Cisco Systems, will discuss how IT and operational technology (OT) work together, as opposed to being in separate siloes as once was traditional. Attendees will learn how to fully leverage the power of IoT in their organization by bringing the two sides together and bridging the communication gap. He will also look at what good leadership must entail in order to accomplish this, and how IT managers ca...
SYS-CON Events announced today that CA Technologies has been named “Platinum Sponsor” of SYS-CON's 20th International Cloud Expo®, which will take place on June 6-8, 2017, at the Javits Center in New York City, NY, and the 21st International Cloud Expo®, which will take place October 31-November 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. CA Technologies helps customers succeed in a future where every business – from apparel to energy – is being rewritten by software. From ...
SYS-CON Events announced today that Cloud Academy will exhibit at SYS-CON's 20th International Cloud Expo®, which will take place on June 6-8, 2017, at the Javits Center in New York City, NY. Cloud Academy is the industry’s most innovative, vendor-neutral cloud technology training platform. Cloud Academy provides continuous learning solutions for individuals and enterprise teams for Amazon Web Services, Microsoft Azure, Google Cloud Platform, and the most popular cloud computing technologies. Ge...
The best way to leverage your Cloud Expo presence as a sponsor and exhibitor is to plan your news announcements around our events. The press covering Cloud Expo and @ThingsExpo will have access to these releases and will amplify your news announcements. More than two dozen Cloud companies either set deals at our shows or have announced their mergers and acquisitions at Cloud Expo. Product announcements during our show provide your company with the most reach through our targeted audiences.
20th Cloud Expo, taking place June 6-8, 2017, at the Javits Center in New York City, NY, will feature technical sessions from a rock star conference faculty and the leading industry players in the world. Cloud computing is now being embraced by a majority of enterprises of all sizes. Yesterday's debate about public vs. private has transformed into the reality of hybrid cloud: a recent survey shows that 74% of enterprises have a hybrid cloud strategy.
SYS-CON Events announced today that Outlyer, a monitoring service for DevOps and operations teams, has been named “Bronze Sponsor” of SYS-CON's 20th International Cloud Expo®, which will take place on June 6-8, 2017, at the Javits Center in New York City, NY. Outlyer is a monitoring service for DevOps and Operations teams running Cloud, SaaS, Microservices and IoT deployments. Designed for today's dynamic environments that need beyond cloud-scale monitoring, we make monitoring effortless so you...
With major technology companies and startups seriously embracing Cloud strategies, now is the perfect time to attend @CloudExpo | @ThingsExpo, June 6-8, 2017, at the Javits Center in New York City, NY and October 31 - November 2, 2017, Santa Clara Convention Center, CA. Learn what is going on, contribute to the discussions, and ensure that your enterprise is on the right path to Digital Transformation.
Have you ever noticed how some IT people seem to lead successful, rewarding, and satisfying lives and careers, while others struggle? IT author and speaker Don Crawley uncovered the five principles that successful IT people use to build satisfying lives and careers and he shares them in this fast-paced, thought-provoking webinar. You'll learn the importance of striking a balance with technical skills and people skills, challenge your pre-existing ideas about IT customer service, and gain new in...
SYS-CON Events announced today that CrowdReviews.com has been named “Media Sponsor” of SYS-CON's 20th International Cloud Expo, which will take place on June 6–8, 2017, at the Javits Center in New York City, NY. CrowdReviews.com is a transparent online platform for determining which products and services are the best based on the opinion of the crowd. The crowd consists of Internet users that have experienced products and services first-hand and have an interest in letting other potential buyers...
With 10 simultaneous tracks, keynotes, general sessions and targeted breakout classes, Cloud Expo and @ThingsExpo are two of the most important technology events of the year. Since its launch over eight years ago, Cloud Expo and @ThingsExpo have presented a rock star faculty as well as showcased hundreds of sponsors and exhibitors! In this blog post, I provide 7 tips on how, as part of our world-class faculty, you can deliver one of the most popular sessions at our events. But before reading the...